Pauketat, Timothy R. 2013a. An Archaeology of the Cosmos: Rethinking Agency and Religion in Ancient America, London: Routledge
Pauketat, Timothy R. and Susan M. Alt (eds.). 2015b. Medieval Mississippians: The Cahokian World Santa Fe, NM: School for Advanced Research Press.

Cahokia’s Precincts
Alt, Susan M., Jeffery D. Kruchten, and Timothy R. Pauketat, 2010. 'The Construction and Use of Cahokia's Grand Plaza'. Journal of Field Archaeology, 35 (2), 131.
Pauketat, Timothy R. 1998. The Archaeology of Downtown Cahokia: The Tract 15A and Dunham Tract Excavations, Urbana: Illinois Transportation Archaeological Research Program, Studies in Archaeology Number 1, University of Illinois.
Pauketat, Timothy R., Andrew C. Fortier, Thomas E. Emerson, and Susan M. Alt, 2013. 'A Mississippian Conflagration and its Historical Implications'. Journal of Field Archaeology, 38, 208.
Pauketat, Timothy R. (ed.), 2005. The Archaeology of the East St. Louis Mound Center, Part I: The Southside Excavations Urbana: Transportation Archaeological Research Reports No. 21, Illinois Transportation Archaeological Research Program, University of Illinois.
Pauketat, Timothy R. (ed.), 2013b. The Archaeology of Downtown Cahokia II: The 1960 Excavation of Tract 15B Urbana: Studies in Illinois Archaeology 8, Illinois State Archaeological Survey.
Pauketat, Timothy R., Susan M. Alt, and Jeffery D. Kruchten, 2015a. 'City of Earth and Wood: Cahokia and Its Material-Historical Implications'. In A World of Cities, edited by Norman Yoffee, Cambridge: Cambridge University Press, 437-454.

The Mississippian Initiative
Pauketat, Timothy R., Robert F. Boszhardt, and Danielle M. Benden, 2015b. 'Trempealeau Encounters: An Ancient Colony's Causes and Effects'. American Antiquity, 80, 260.

Emerald Acropolis Project
Alt, Susan M. and Timothy R. Pauketat, 2015. 'The Elements of Cahokian Shrine Complexes and the Basis of Mississippian Religion'. In Religion and Politics in the Ancient Americas, edited by Sarah Barber and Arthur Joyce, Boulder: University of Colorado Press.
Pauketat, Timothy R. and Susan M. Alt, 2015a. 'Religious Innovation at the Emerald Acropolis: Something New Under the Moon'. In Religion and Innovation: Antagonists or Partners? , edited by Donald Yerxa, London: Bloomsbury, in press.

Richland Analysis Project
Alt, Susan M., 2002. 'Identities, Traditions, and Diversity in Cahokia’s Uplands'. Midcontinental Journal of Archaeology 27, 217.
Alt, Susan M., 2006. 'The Power of Diversity: The Roles of Migration and Hybridity in Culture Change'. In Leadership and Polity in Mississippian Society, edited by B. M. Butler and P. D. Welch, Carbondale: Center for Archaeological Investigations, Occasional Paper No. 33. Southern Illinois University, 289-308.
Alt, Susan M., 2008. 'Unwilling Immigrants: Culture, Change, and the “Other” in Mississippian Societies'. In Invisible Citizens: Slavery in Ancient Pre-State Societies, edited by Cathy M. Cameron, Salt Lake City: University of Utah Press, 205-222.
Alt, Susan M., 2017. Cahokia’s Complexities. Manuscript submitted to the University of Alabama Press, Tuscaloosa.
Alt, Susan M. and Timothy R. Pauketat, 2011. 'Why Wall Trenches?'. Southeastern Archaeology, 30 (1), 108.
Kruchten, Jeffery D., 2012. 'Recent Investigations at the Knoebel Site, St. Clair County, Illinois'. Illinois Archaeology, 24.
Pauketat, Timothy R., 2003. 'Resettled Farmers and the Making of a Mississippian Polity'. American Antiquity, 68, 39.
Pauketat, Timothy R. and Susan M. Alt, 2004. 'The Making and Meaning of a Mississippian Axe-head Cache'. Antiquity, 78, 779.
Pauketat, Timothy R. and Susan M. Alt, 2016. 'Water and Shells in Bodies and Pots: Mississippian Rhizome, Cahokian Poiesis'. In Relational Identities and Other-than-Human Agency in Archaeology, edited by Eleanor Harrison-Buck and Julia Hendon, Boulder: University of Colorado Press.